PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G133100.1.p
Common NameSETIT_012785mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 692aa    MW: 73211.8 Da    PI: 7.9631
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G133100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30272329260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +Dgy+WrKYGqK+vk se+prsY++Ct+ +C+vkkkvers+ +++++ei+Y+g+Hnh+k
  Seita.7G133100.1.p 272 EDGYSWRKYGQKQVKHSEYPRSYFKCTHLNCQVKKKVERSH-EGHITEIIYKGTHNHPK 329
                         8****************************************.***************85 PP
2WRKY104.84.7e-33477535159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Seita.7G133100.1.p 477 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 535
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.769266330IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-27266330IPR003657WRKY domain
SuperFamilySSF1182909.29E-25266330IPR003657WRKY domain
SMARTSM007746.8E-34271329IPR003657WRKY domain
PfamPF031061.9E-23272328IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-37462537IPR003657WRKY domain
SuperFamilySSF1182907.19E-29469537IPR003657WRKY domain
PROSITE profilePS5081137.539472537IPR003657WRKY domain
SMARTSM007744.0E-38477536IPR003657WRKY domain
PfamPF031062.8E-25478535IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MEGHVAMEEW KDPNPPESLM RGFQTGTFPP DAEVAKAGFE KEGRSLPMTP QFGQKSSPGS  60
SLAERMQARA GFRVPKLSMP FSTAVGADNS VPGAPSPYLT IPPGLSPATL LDSPVFISNG  120
MGQTSPTTGK LFRLGGTNDN DPIRFGGSPL GAGPDSFSFK PLDLKSSLYT AEGKKESLCN  180
NQPPLPSTHV SVKTETKIQP VQEANLLGKL NQQNQSGQTN LKSGSHDSKL SRLAPVTGAG  240
NEHVSSPHGQ PMEEGDARGG DYTAIATSTP AEDGYSWRKY GQKQVKHSEY PRSYFKCTHL  300
NCQVKKKVER SHEGHITEII YKGTHNHPKP TQSRRPGVPP LHPFGDGAQA EAPDNQGSHS  360
NVAGARLNNA GIEDLHGDGT DATSPPSVPG ELCDSSASMQ IHDAGGLDVT SAVSDEVDGG  420
DRVTHGSLSQ GGADAEGDEL ESKRRKLESY TIDMSTASRA VREPRVVIQT TSEVDILDDG  480
YRWRKYGQKV VKGNPNPRSY YKCTHPGCSV RKHVERASHD LKSVITTYEG KHNHEVPAAR  540
NSGHPSTATA TGAAAARRPE HPSAHDGLMR HLGSCGAPFA LPLPSRDPLA PMVNYPAYAS  600
AALGGSGGSG LLPSLLMPGG GPLGQVEGLK LPMLAQSSLQ QQHPLLRHRQ AMQAAGLVAP  660
KAADVKVEGA GAAAPSVYQL MRNGLPLGHQ M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36272538878Probable WRKY transcription factor 4
2lex_A2e-36272538878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G133100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702708.10.0probable WRKY transcription factor 34
RefseqXP_022683649.10.0probable WRKY transcription factor 34
TrEMBLA0A368RV190.0A0A368RV19_SETIT; Uncharacterized protein
STRINGSi012785m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-118WRKY DNA-binding protein 2