PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G125400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27183 Da    PI: 8.0742
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G125400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.9e-281059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n++ rqvtfskRrngi+KKA EL +LCdaev ++ifsstg+lyey+s
  Seita.7G125400.1.p 10 RIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLVIFSSTGRLYEYAS 59
                        8***********************************************86 PP
2K-box89.75.3e-3075170398
               K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         +++ +++ +++ + +q+e+a L+++++nLq+++R+l+G+dL+ L +keLq+Le+qLe sl+ iR+kK++ll+++i+el +k   +q++n++
  Seita.7G125400.1.p  75 QQQLVANPNTELKFWQREAASLRQQLHNLQENHRQLMGQDLSGLGVKELQNLENQLEMSLRCIRTKKDQLLVDEIHELSRKGSLIQQDNME 165
                         56777788999******************************************************************************** PP

               K-box  94 Lrkkl 98 
                         L +k+
  Seita.7G125400.1.p 166 LCRKV 170
                         *9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
CDDcd002652.81E-45277No hitNo description
SuperFamilySSF554554.45E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.2E-2883170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.73186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KARELAILCD AEVGLVIFSS TGRLYEYAST  60
SMKSVIDRYG RAKEQQQLVA NPNTELKFWQ REAASLRQQL HNLQENHRQL MGQDLSGLGV  120
KELQNLENQL EMSLRCIRTK KDQLLVDEIH ELSRKGSLIQ QDNMELCRKV NVIHQENVEL  180
YKLYEKEAAG EVSGDSTTPY NFAVVENANI PIHLELNTLP QEDVEQPAPP KLGLQLNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20183183MEF2C
5f28_B1e-20183183MEF2C
5f28_C1e-20183183MEF2C
5f28_D1e-20183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G125400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975863.11e-177MADS-box transcription factor 27
SwissprotQ6EP491e-139MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A368RUR71e-175A0A368RUR7_SETIT; Uncharacterized protein
STRINGPavir.Ga01454.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-94AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]