PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G112500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 414aa    MW: 43556.4 Da    PI: 6.7144
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G112500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.82.9e-1377158286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +++   +       ++++fd+l+
  Seita.7G112500.1.p  77 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKapkSDVQCKNRIDTLKKKYKVERAKPVS-------SWQFFDRLD 158
                         *************************************87788876222667**************99887775.......599999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.2E-2375159No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDDDDDVSPD ASPSPASSPG GPPSASLPVA DPVTVASAPP GGGYAVALPI HRTAASLYAT  60
AGGGGGGGGG GGREDAWSEG ATSALIDAWG ERFVALGRGS LRHPQWQEVA DAVSSRDGYS  120
KAPKSDVQCK NRIDTLKKKY KVERAKPVSS WQFFDRLDFL LAPTYGNKPG SGGGGGGGHN  180
SNSRSPVPAA LRVSFPQRSR TPLMPAAASA AKRRPPSPEP SVSSESSDGF PPLPALPAAN  240
GKRRRTDEGR ADGGSSGDRT QGLRDLAQAI RRFGEAYERV EAAKLDQAAE MERRRIDFAR  300
ELESQRAQFF LNAQMELTQA KNHASSGVAT IPAGATTVGG SSRRMSMATD AGGSSNHHHH  360
SRYRISHGDR HRNAPRSHYQ QYHDNNHAAA AAAASEGEQS DEEEEDDEEE ESQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G112500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975744.10.0trihelix transcription factor ASIL2
TrEMBLA0A368RUH80.0A0A368RUH8_SETIT; Uncharacterized protein
STRINGSi010246m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-33sequence-specific DNA binding transcription factors