PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G057700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 356aa MW: 40002.7 Da PI: 5.6309 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.9 | 3.1e-15 | 166 | 212 | 4 | 51 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 ++W+ LH++F++a+e L G+ A P++i lm+v+g+ ++h+ SHLQ Seita.7G057700.1.p 166 ICWNDYLHRKFLHALEIL-GEGAASPRNIEILMNVEGVNRKHISSHLQ 212 79****************.9**************************** PP | |||||||
2 | Response_reg | 47.5 | 1e-16 | 15 | 125 | 1 | 110 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 v++vd+++ ++ r++l +y ++++ +++ +al+ l+ + +D+ l+ + m +m+G+++l re ++++++i+++ + +++ ++++ Seita.7G057700.1.p 15 VIVVDEDKHHANSTRSMLCTLNY-HATAYTSPIKALDFLEGHAqeVDMALVAVHMEEMHGFQFLDVVREDHKDIQVIMMSNETTMDIMKRC 104 799********************.***************777667********************************************** PP HHTTESEEEESS--HHHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvka 110 +k+Ga + Kp+d ++++ Seita.7G057700.1.p 105 IKLGACFLVNKPIDAHTIHNM 125 **************9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.13E-22 | 11 | 129 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.9E-23 | 12 | 134 | No hit | No description |
SMART | SM00448 | 7.4E-6 | 13 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 25.035 | 14 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.5E-16 | 15 | 125 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.70E-13 | 16 | 129 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-13 | 161 | 212 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-9 | 161 | 214 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-12 | 166 | 212 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGKRKKLSPT HGFSVIVVDE DKHHANSTRS MLCTLNYHAT AYTSPIKALD FLEGHAQEVD 60 MALVAVHMEE MHGFQFLDVV REDHKDIQVI MMSNETTMDI MKRCIKLGAC FLVNKPIDAH 120 TIHNMWRHID FGNSRMHNIK KSLQGNGEEQ DVSYWKESAK TKKGYICWND YLHRKFLHAL 180 EILGEGAASP RNIEILMNVE GVNRKHISSH LQCRTSASKS ESAKSHQESP NNSPDIQQEE 240 MTADEDMPHA QMGSFSDNNA HAAMRRSIQF STMYDESQYL YFSSSDGGLD MMEDRNDDTC 300 AFGFSALVSA AETFSADGTK EMLNNNSSVE QDCQGDKVGK AVKLVEYSDS EADEI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G057700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977897.1 | 1e-170 | two-component response regulator ORR29 | ||||
TrEMBL | A0A368RU90 | 0.0 | A0A368RU90_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb02032.1.p | 1e-180 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5920 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 2e-22 | response regulator 10 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G057700.1.p |