PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G055000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 335aa    MW: 37474.2 Da    PI: 9.777
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G055000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.5e-12240323186
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         ++k++++  + +++ l+lp  f++++g+ +++s+tl+   +s  sW+ ++i   +s+++v  +G k+F ++ g+k+gD+++F  ++
  Seita.7G055000.1.p 240 WVKKEINTCAIQNSTLYLPPFFCKAIGIWEPCSITLKTSMSSTMSWQARVIPYDHSSHHV--NGLKRFYQDSGIKVGDVCTFIIIE 323
                         678999999999*********************9999999999*******7666666665..8*******************8654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.07E-777154No hitNo description
SuperFamilySSF1019369.81E-1477159IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-1277159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-13236331IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-10241323IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-10244331IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MTSPAAAAQH PRVLLRFTHN TLLVAPARPC ASPRSSPRRS APTGGRARPW PLGVEWDGEG  60
AFLGGGWREF AAACGLIPAK FVQWYIPKEH LLDNHMAIVS GPLGKVSHVE LQMSQSEVFF  120
GGGWSQFLVL HDITESNALL LRYEGNMVFT VKVFEPDGCQ RESKYKDIKM QQSEQKMNKI  180
NIITYTQKLQ QNPSASSMKR KRENDRSRCE VQKRPKGSMT SSYKASSKAG CIFEIGPPAW  240
VKKEINTCAI QNSTLYLPPF FCKAIGIWEP CSITLKTSMS STMSWQARVI PYDHSSHHVN  300
GLKRFYQDSG IKVGDVCTFI IIETTLWHVV IEPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G055000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683932.13e-90putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A368RSN10.0A0A368RSN1_SETIT; Uncharacterized protein
STRINGSi012124m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-08B3 family protein