PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G054900.1.p
Common NameLOC101769150, SETIT_012086mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 398aa    MW: 44365.2 Da    PI: 9.9013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G054900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-12521123599
                         EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         t  + ++ g++W+v++   + +++ +l++GW +F  a+g+ +g fvv++++g  ++ l++k+f++
  Seita.7G054900.1.p  52 TALVVSPFGKVWRVEV--GRDGDGAFLGRGWAGFLAAHGVGVGWFVVLRHEG--GGALTFKAFDT 112
                         778899**********..999999*************************765..77789999987 PP
2B341.52.4e-131502291496
                         T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           +++p +f++++  ++  +s+t ++ ++ g+ W+++l  ++ ++++++++GW++F + +g+  gD+++++++g++ f  ++k+
  Seita.7G054900.1.p 150 EKMIIPARFVKRYvTEEYLNSRTAVIFSPLGKFWQIEL--ENDQSGMFFAGGWSQFLEFHGISKGDILLLRYEGNMVF--KFKA 229
                         459**********8444458899***************..999999****************************9999..5554 PP
3B356.16.8e-18311394996
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++l +++l+lp kf++++g ++++++tl+ e  s rsW+v      +++  ++ ++GWk+F+++n+Lk+gD ++F  +++  +  +v +
  Seita.7G054900.1.p 311 SML-ECLLSLPMKFCRRIGFQNTCTITLKTEMDSTRSWKVHG--VAYKNYcCIRGDGWKSFCHENRLKTGDLCTFNIIET--TLWHVEI 394
                         333.589***********99999*99999999999******9..444444256789*******************97753..3245555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.2E-416113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-1225115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-1150114IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-1051112IPR003340B3 DNA binding domain
CDDcd100172.80E-755111No hitNo description
PROSITE profilePS508639.26360113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-18136235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.492137233IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-19137239IPR015300DNA-binding pseudobarrel domain
CDDcd100178.91E-13138230No hitNo description
SMARTSM010194.7E-11140233IPR003340B3 DNA binding domain
PfamPF023626.0E-11149227IPR003340B3 DNA binding domain
CDDcd100179.08E-11304396No hitNo description
SMARTSM010191.8E-6304395IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-17306396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-17306396IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-14313387IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983317397IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MPSSRSNAGA RAVAKQLKVL VPPSFHKMRI SDELAGCFDA GGGVGEGAPG GTALVVSPFG  60
KVWRVEVGRD GDGAFLGRGW AGFLAAHGVG VGWFVVLRHE GGGALTFKAF DTSFCIKEFA  120
APAAVMASRS RKGVSCKPQF IRIIYPNFTE KMIIPARFVK RYVTEEYLNS RTAVIFSPLG  180
KFWQIELEND QSGMFFAGGW SQFLEFHGIS KGDILLLRYE GNMVFKFKAF GLSGCQKDFK  240
NKDAGINQNI EMQQESPSPI RKRKDNDEKS SSEKNKTPKS SVTFLNAKPS LKKPDYQIEP  300
SSWIRKEITT SMLECLLSLP MKFCRRIGFQ NTCTITLKTE MDSTRSWKVH GVAYKNYCCI  360
RGDGWKSFCH ENRLKTGDLC TFNIIETTLW HVEIIRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G054900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977888.10.0putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS741e-118Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLK3YCY50.0K3YCY5_SETIT; Uncharacterized protein
STRINGSi012086m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-20B3 family protein