PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G054800.1.p | ||||||||
Common Name | SETIT_012375mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 13623 Da PI: 9.1203 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.4e-17 | 28 | 111 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++k++++ + k + +++p f++++g+ +++++tl+ +s sW+v++ k+ ++ ++GWk+F+++n +kegD ++F +++ Seita.7G054800.1.p 28 WLKKEISTRMIKIC-ISFPAAFCNAIGLREACTVTLKTSLSSTSSWQVRV-LPYKDTSHQVGSGWKSFCEENMIKEGDLCTFNVIE 111 67888888888888.9*************99987777777889*******.3444445999*********************9664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0033 | 29 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-14 | 29 | 111 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.88E-15 | 29 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.644 | 42 | 122 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-16 | 42 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-7 | 72 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MKQKGSMASL KNASSRAQGV YVIGPPAWLK KEISTRMIKI CISFPAAFCN AIGLREACTV 60 TLKTSLSSTS SWQVRVLPYK DTSHQVGSGW KSFCEENMIK EGDLCTFNVI EMMLWHVIID 120 RC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G054800.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684232.1 | 2e-69 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A368RSH3 | 5e-86 | A0A368RSH3_SETIT; Uncharacterized protein | ||||
STRING | Si012375m | 5e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31650.1 | 3e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G054800.1.p |