PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G31650.1 | ||||||||
Common Name | F28M20.160, REM6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 493aa MW: 56230.6 Da PI: 10.4232 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.5 | 5.8e-19 | 20 | 95 | 9 | 90 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +ks+ + +p kf++++ + k+e+kt++l++ +s r+W+vk+ ++++lt+GWkeFv+a++L+ Dfv+Fk++g++ f AT4G31650.1 20 PGFKSH-INIPVKFFSKYiK-GKHEGKTVKLRSdSSKRTWKVKI------EGHTLTDGWKEFVEAHDLRISDFVIFKHKGDMFF 95 567777.99*********64.456889*****96777*******......6678***********************9998777 PP | |||||||
2 | B3 | 60.3 | 3.2e-19 | 132 | 226 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f++ ++ ++l ++ + +p++fa+++g + + +++l++e+g+ We ++i + ksg+++ ++GWk+ + + +L++gD+++Fkl + + + +v+++++k AT4G31650.1 132 FSQSVTTSNLMRDSVGVPRDFAKRYGFNIGR-HEIVLMNEEGKPWESEVI-SYKSGKVIVAGGWKSLCTESKLEVGDSCTFKLLH-NAKMPVFRLCSK 226 56677788888889***********877655.59***************5.77778899999********************998.566689999875 PP | |||||||
3 | B3 | 65.6 | 7.4e-21 | 296 | 373 | 16 | 94 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +lp++f+++ g++k +s +++l++e r+W++ l++r ++++++ ++GW++F+++ngLk gD+v+Fkl++++++++++ AT4G31650.1 296 KSLPRNFVRSDGLIK-GSNKIVLMNEGARTWTLILKFRDSRRSFYSRGGWRSFCRENGLKPGDSVTFKLESSNTKTPLL 373 489********9997.567**************************************************9876665654 PP | |||||||
4 | B3 | 63.8 | 2.6e-20 | 391 | 490 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 f++ ++++++ +s+rl+l+kkf++ ++++ +++k++tl d++g++W v+l ++k+ r+vl++G +eF++a g+k+ ++vv++l+++ +++ +++k++ AT4G31650.1 391 FLTLTVTPSSIRSSRLYLSKKFISVNKMERAGGKKITLLDKNGEEWPVTLLMDKRYTRMVLGSGLREFCNAIGVKAYESVVLELVWEeTTTLPMFKFC 488 77888999******************9999*******************************************************9988888999999 PP -S CS B3 98 rk 99 +k AT4G31650.1 489 SK 490 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-23 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-20 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.633 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.39E-15 | 12 | 98 | No hit | No description |
SMART | SM01019 | 2.7E-22 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-13 | 23 | 92 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-19 | 124 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-19 | 125 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.74E-14 | 131 | 225 | No hit | No description |
PROSITE profile | PS50863 | 13.521 | 131 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-23 | 132 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-18 | 132 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.115 | 281 | 378 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-20 | 285 | 379 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-18 | 296 | 372 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.35E-19 | 297 | 376 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-15 | 297 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-17 | 297 | 375 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 384 | 486 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-17 | 387 | 488 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.93E-16 | 390 | 488 | No hit | No description |
SMART | SM01019 | 2.0E-27 | 391 | 491 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-19 | 391 | 490 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.505 | 391 | 490 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MNNPTLFSPK SPHFFQPLLP GFKSHINIPV KFFSKYIKGK HEGKTVKLRS DSSKRTWKVK 60 IEGHTLTDGW KEFVEAHDLR ISDFVIFKHK GDMFFDVTAL GSSCWESSRK EKEIEENIET 120 EPDQFSSDLT CFSQSVTTSN LMRDSVGVPR DFAKRYGFNI GRHEIVLMNE EGKPWESEVI 180 SYKSGKVIVA GGWKSLCTES KLEVGDSCTF KLLHNAKMPV FRLCSKLPKA GAEARPLKRA 240 RVQRWSQESR SKHDVREKIA EEGEPSRRNR TSNKSTGDQG KLQQTQSCFI FDHVAKSLPR 300 NFVRSDGLIK GSNKIVLMNE GARTWTLILK FRDSRRSFYS RGGWRSFCRE NGLKPGDSVT 360 FKLESSNTKT PLLLFSIAES KSASTKDRTR FLTLTVTPSS IRSSRLYLSK KFISVNKMER 420 AGGKKITLLD KNGEEWPVTL LMDKRYTRMV LGSGLREFCN AIGVKAYESV VLELVWEETT 480 TLPMFKFCSK IKT |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18417847 | 0.0 | ||||
Expression Atlas | AT4G31650 | - | ||||
AtGenExpress | AT4G31650 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G31650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G31650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031004 | 0.0 | AL031004.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project). | |||
GenBank | AL161579 | 0.0 | AL161579.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194893.1 | 0.0 | Transcriptional factor B3 family protein | ||||
Swissprot | O81782 | 0.0 | REM6_ARATH; B3 domain-containing protein REM6 | ||||
TrEMBL | A0A1P8B943 | 0.0 | A0A1P8B943_ARATH; Transcriptional factor B3 family protein | ||||
STRING | AT4G31650.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT4G31650.1 |
Entrez Gene | 829293 |
iHOP | AT4G31650 |
wikigenes | AT4G31650 |
Publications ? help Back to Top | |||
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