PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.7G054500.1.p | ||||||||
Common Name | SETIT_012530mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 12753.9 Da PI: 8.0424 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53 | 6.4e-17 | 30 | 104 | 10 | 86 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + k + +++p f++++g+ +++++tl+ +s sW+v++ k+ ++ ++GWk+F+++n +kegD+++F +++ Seita.7G054500.1.p 30 MIKIC-ISFPAAFCNAIGLREACTVTLKTSLSSTSSWQVRV-LPYKDTSHQVGSGWKSFCEENMIKEGDVCTFNVIE 104 44445.99************99987777777889*******.3444445999*********************9664 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.003 | 22 | 113 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.22E-16 | 25 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-17 | 27 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.7E-14 | 32 | 104 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.8 | 35 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.53E-8 | 65 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 116 aa Download sequence Send to blast |
MASLKNASSC AQGVYVIGPP AWLKEISTRM IKICISFPAA FCNAIGLREA CTVTLKTSLS 60 STSSWQVRVL PYKDTSHQVG SGWKSFCEEN MIKEGDVCTF NVIEMMLWHV VIDRC* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.7G054500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684232.1 | 5e-78 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A368RS66 | 2e-80 | A0A368RS66_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YE69 | 5e-78 | K3YE69_SETIT; Uncharacterized protein | ||||
STRING | Si012530m | 9e-79 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31650.1 | 1e-06 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.7G054500.1.p |