PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G054200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 393aa MW: 43054.5 Da PI: 9.021 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.6 | 8.2e-12 | 22 | 105 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + l++p + a+e+g + ++ + +g ++W v++ + +g+ +l++GW eF++a g+++g +v+++ ++ l+vk+f++ Seita.7G054200.3.p 22 SCDTLRIPDELAAEIGAGQ---ALVVCPSGTGgkvKVWPVEV--GRDGGGAFLGSGWPEFAEASGVEAGWLLVLRHR--GRGVLTVKAFDA 105 557899*********7552...2355555444899*******..9******************************65..567779999987 PP | |||||||
2 | B3 | 51.4 | 1.9e-16 | 310 | 381 | 14 | 86 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 + + lp f++++g ++++++t + +s sW+v + ++g+ + l++GW++F+++n++kegD+++F ++ Seita.7G054200.3.p 310 KYIPLPAAFCNAIGFQEACTITFKTSLSSTSSWQVHV--LPYKGSsHQLGSGWRRFCQENKIKEGDVCTFNIID 381 44779999******9*99976666666888*******..444444499**********************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.005 | 18 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-11 | 22 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-9 | 22 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.34E-7 | 22 | 104 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-11 | 24 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.516 | 54 | 106 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.502 | 132 | 228 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-14 | 135 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.002 | 135 | 228 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.79E-10 | 136 | 225 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-15 | 138 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.843 | 297 | 392 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.023 | 299 | 392 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-17 | 301 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-16 | 303 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.6E-14 | 311 | 388 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.25E-9 | 314 | 377 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MASSGDQWAS KAKNPRVLLQ FSCDTLRIPD ELAAEIGAGQ ALVVCPSGTG GKVKVWPVEV 60 GRDGGGAFLG SGWPEFAEAS GVEAGWLLVL RHRGRGVLTV KAFDASRCLR VLGATTPPEV 120 EATVSSRDDA RKQQFISAHP TNFMEKMLIP AKFVQQYLPK EHLNNQSAIV LGPIGKVHSI 180 KLEMGQSDLF FAGGWSQFLA FHDITEANAL LLRYEGNMVF TVKIFGPNGC PIESKHKEVR 240 VPQNIEEQQE APSASIQKCC ENDLPISDGE KKPQGSITSL KKASPRVKCI YKIGPPAWIR 300 KEMSTKTIRK YIPLPAAFCN AIGFQEACTI TFKTSLSSTS SWQVHVLPYK GSSHQLGSGW 360 RRFCQENKIK EGDVCTFNII DSTLWHVVIA RR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G054200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975298.1 | 0.0 | putative B3 domain-containing protein Os04g0347400 isoform X2 | ||||
TrEMBL | A0A368RSB4 | 0.0 | A0A368RSB4_SETIT; Uncharacterized protein | ||||
STRING | Si010026m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 5e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G054200.3.p |