PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G054100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 342aa    MW: 38450.3 Da    PI: 7.5002
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G054100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-152573291385
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         +++ +lp  f++++g+ +++++tl+   +s rsW+v +  +k+s++yv +  Wk+F+++n++k+gD+++++ +
  Seita.7G054100.1.p 257 THNKYLPYAFCDAIGLREPCTITLKTSMSSTRSWQVLVVPNKNSSHYVRGLDWKRFCEENEIKVGDVCTISIV 329
                         45689************99988888888999*******99*****************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.937179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-6181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-7381IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-996156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-797181IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.57101180IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-8214258IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.318218260IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-9223257IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0039251339IPR003340B3 DNA binding domain
CDDcd100171.04E-10253326No hitNo description
PfamPF023621.6E-13254330IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-13260339IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-13261339IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.997262341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRIPDELAKG IGTGEARVVG PSGGKVKVWR VEAGRDGDGA FLGRGWPEIA AAFSVGDRWF  60
LVLQHHGGGI LTLKAFDASG CIRGLSTSTY CSKDVSHRPQ FVSVLPHDFM EKMLIPAKFV  120
EHYIPEEHKN SRMAMVIGSL GKICRVELEM NESNLFLRAN ALLLKYEGNM VFTVRVFGPD  180
GFQRESKDKD IRIQQVEQKI NPSMVVFESV SSGYECENNS FVIVRGWMMF YRENSLKEGD  240
ICTFNIIETT LWHVVITHNK YLPYAFCDAI GLREPCTITL KTSMSSTRSW QVLVVPNKNS  300
SHYVRGLDWK RFCEENEIKV GDVCTISIVE TTLWHVSLIG Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G054100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977884.11e-180putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RSE50.0A0A368RSE5_SETIT; Uncharacterized protein
STRINGSi012721m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-12B3 family protein