PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G043000.1.p | ||||||||
Common Name | SETIT_012025mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 336aa MW: 35449.9 Da PI: 10.1847 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 259 | 317 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +p+++++tYegeH+h+ Seita.7G043000.1.p 259 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGEPSMLIVTYEGEHRHS 317 69************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.2E-20 | 207 | 256 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.9E-32 | 247 | 317 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 253 | 319 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-25 | 256 | 317 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-36 | 258 | 318 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-26 | 260 | 316 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MMTLDLMGGY GRVDEQVAIQ EAAAAGLRGM EHLISQLSRA GTGERPSSPP PGTAPAQQHQ 60 QQLPEQSHPQ QQVDCREITD MTVSKFKKVI SILNRTGHAR FRRGPMVAQS PGPAAACSEP 120 AALPARSAPA ARPVTLDFTK SVSGYSRDSG FSVSGASSSF LSSVTTGDGS VSNGRGGGGS 180 SSLMLPPAAG AASCGKPPLS SSGAGQKRRC HEHAHSENVA GGKYGANGGR CHCSKRRKHR 240 VKRTIRVPAI SPKVADIPAD EYSWRKYGQK PIKGSPYPRG YYKCSTVRGC PARKHVERDP 300 GEPSMLIVTY EGEHRHSPAG QDPPPLAPLP ELPNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 246 | 325 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}. | |||||
UniProt | Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G043000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}. | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975218.1 | 0.0 | WRKY transcription factor WRKY51 | ||||
Swissprot | Q0JEE2 | 1e-148 | WRK51_ORYSJ; WRKY transcription factor WRKY51 | ||||
Swissprot | Q6IEN1 | 1e-148 | WRK51_ORYSI; WRKY transcription factor WRKY51 | ||||
TrEMBL | A0A368RS78 | 0.0 | A0A368RS78_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YCS5 | 0.0 | K3YCS5_SETIT; Uncharacterized protein | ||||
STRING | Si012025m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 5e-87 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G043000.1.p |