PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G233600.1.p
Common NameLOC101765462, SETIT_014241mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 277aa    MW: 29491.9 Da    PI: 6.1804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G233600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.8e-11105150454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er RRd++  +f  Lr  +P+      ++++Ka+ L  A+ YI++L
  Seita.6G233600.1.p 105 SHVEAERHRRDKLHRRFCDLRAAVPNV-----TRMDKASLLADATAYISEL 150
                         699***********************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.681101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-9105155No hitNo description
PfamPF000102.6E-8105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13105162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14105166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDEHARPTSS TSNPPSPASF FSAAGNGGLV LEFPYTEVLE QWLMDDDDDN AQDQPPLEHG  60
AVSGDGGGSS ADLSSMNNNN PPAAAATKRR GRKPGPSSGA GPAFSHVEAE RHRRDKLHRR  120
FCDLRAAVPN VTRMDKASLL ADATAYISEL RARVEQLEVE ATRAALRKAS PFLVVDDDGA  180
APAAGSFGLE EDEKLEVRMV VGQESAALRL TTAARHRHAT ARLMDALRSL DLPVQHACAC  240
RVGGVVVQDA VVDVPTALRD EGRLRAALLH RLQHSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1699160263Transcription factor MYC2
5gnj_B5e-1699160263Transcription factor MYC2
5gnj_E5e-1699160263Transcription factor MYC2
5gnj_F5e-1699160263Transcription factor MYC2
5gnj_G5e-1699160263Transcription factor MYC2
5gnj_I5e-1699160263Transcription factor MYC2
5gnj_M5e-1699160263Transcription factor MYC2
5gnj_N5e-1699160263Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G233600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974091.10.0transcription factor bHLH14
TrEMBLK3YJ220.0K3YJ22_SETIT; Uncharacterized protein
STRINGSi014241m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-20bHLH family protein