PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G226500.2.p | ||||||||
Common Name | LOC101772880, SETIT_014139mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 32755.6 Da PI: 6.8587 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 143 | 190 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Seita.6G226500.2.p 143 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 190 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-17 | 137 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.64E-11 | 137 | 194 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 139 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 139 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 143 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MANFSSHHSA LLLKMPAALT NGHSPNLSSL LFYGQNHGQG APANANAASG TAAAMAEDAS 60 LESSSAVVDT SPQGSASPMD RKRKATEDSA TLSSAHSKDC KQEGKSKRGK RPHKEAEEKS 120 TTDDEAPKGY IHVRARRGQA TDSHSLAERV RRERISERMR MLQALVPGCD KVTGKALILD 180 EIINYVQSLQ NQVEFLSMRI ASMSPVLYGF GLDSDGLHDH AQMGGMIQEA LAMPGPVLSQ 240 ASPTPSQTIM DTTTTSSTPY SLQGQGAISF SQDNGSNYLM QQAVGEPTRQ ELLNQLVFNN 300 MCSFQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G226500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035377 | 1e-177 | BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974028.1 | 0.0 | transcription factor bHLH137 | ||||
TrEMBL | A0A368RPH3 | 0.0 | A0A368RPH3_SETIT; Uncharacterized protein | ||||
STRING | Si014139m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 6e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G226500.2.p |
Entrez Gene | 101772880 |