PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G210500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 235aa    MW: 24403.8 Da    PI: 8.4668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G210500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.7e-103580453
                 AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                         GVr +  +g ++AeIr ps+   rkr+++g+f  a +Aa a++aa+  +
  Seita.6G210500.1.p 35 VGVRKRL-WGGYAAEIRIPSS---RKRVWIGRFQHAMQAALAYDAAMFLF 80
                        59**887.**********965...4*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.5953394IPR001471AP2/ERF domain
SMARTSM003803.1E-1533100IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-123485IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-193595IPR001471AP2/ERF domain
PfamPF008477.0E-53578IPR001471AP2/ERF domain
CDDcd000182.16E-153596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MASSAANGSS GAAREQGRAR LAAGGGGLHR DMGWVGVRKR LWGGYAAEIR IPSSRKRVWI  60
GRFQHAMQAA LAYDAAMFLF YGKTLPKLRR YNFPEAPRPS FPEFVRRALT VANVKAIAEE  120
HARSVGRFAP LPPPVIPAPP APLHVAEAAG GAAAAGAGVA VEAAAAGAGV AVDIAPAAGV  180
GATTTAADRR INDEIYIDAD ILTGADCQFS GAPVPDEDFV RLMDMDVDLI FGDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G210500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974850.11e-165ethylene-responsive transcription factor ABI4-like
TrEMBLA0A368RNW81e-164A0A368RNW8_SETIT; Uncharacterized protein
STRINGPavir.Fa00470.1.p5e-71(Panicum virgatum)
STRINGSi014894m7e-71(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.12e-10ERF family protein