PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G210200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 19780.3 Da PI: 7.608 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 6e-12 | 19 | 67 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr + + grW+AeIr+p++ r + ++g+f ++ Aa a++aa +++ge Seita.6G210200.1.p 19 TGVRPR-QGGRWAAEIRVPNT---REKLWIGTFESPRLAALAYDAAVFCFYGE 67 599855.5899*******944...5**********************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.4E-20 | 17 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.492 | 17 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-20 | 17 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-14 | 17 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.82E-18 | 20 | 80 | No hit | No description |
Pfam | PF00847 | 4.6E-6 | 20 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
GGGARPGVAP GRQKQSEWTG VRPRQGGRWA AEIRVPNTRE KLWIGTFESP RLAALAYDAA 60 VFCFYGERLP KTRRLNFPVA PTPELPGIVR ARLTVGNVKA IAEQHARTVD ALLPPPGFAA 120 AAPLVVAAAA PVEAAPATYH GVPTAMADNN LVAGAADDSQ FSFDADGTEW ESELEKSYAS 180 VHDPRV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G210200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974846.1 | 1e-116 | ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A368RNU8 | 1e-131 | A0A368RNU8_SETIT; Uncharacterized protein (Fragment) | ||||
STRING | Si015435m | 1e-115 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 1e-18 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G210200.1.p |