PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G204700.2.p | ||||||||
Common Name | LOC101777762, SETIT_013950mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 349aa MW: 36949.3 Da PI: 8.9507 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.5 | 3.6e-06 | 301 | 326 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR +i +++ +L+el+P+ + Seita.6G204700.2.p 301 SIAERVRRTKISERIRKLQELVPNmD 326 689********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.191 | 295 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-6 | 298 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.96E-4 | 299 | 328 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-5 | 300 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STLLGEVCED FLQPGPRAGS PDAGAADVFS 60 RFLADHQIRD KPHTHFPDTA ALASQQQQQQ QMMFHSQQQQ QQMAAVESGL YRTVSSGMEA 120 PTAGAGAGGS SLIRQSSSPA GFLNHLNMDN GYGGMLRAGM GVGFRNGASA AAAADSTAGG 180 RLKGQLSFSS RQGSLMSQIS EMGSEELGGS SPEGAGGGRG YIPGYPMSSG WEDSSSLMSE 240 SLSGMKRPRD SSEPGQSGLT QQFSLPKTSS EMAAIEKFLQ FQDAVPCKIR AKRGCATHPR 300 SIAERVRRTK ISERIRKLQE LVPNMDKVLN ESRANCTCSA SKNPQYSG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G204700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354634 | 0.0 | AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683307.1 | 0.0 | transcription factor bHLH130 isoform X2 | ||||
TrEMBL | A0A368RNI1 | 0.0 | A0A368RNI1_SETIT; Uncharacterized protein | ||||
STRING | Si013950m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G204700.2.p |
Entrez Gene | 101777762 |