PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G204700.1.p | ||||||||
Common Name | LOC101777762, SETIT_013950mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 372aa MW: 39598.3 Da PI: 8.697 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.4e-13 | 301 | 346 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq Seita.6G204700.1.p 301 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 346 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.945 | 295 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.24E-16 | 298 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.75E-13 | 299 | 350 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 300 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-13 | 301 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-10 | 301 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPMTS SGLLRYRSAP STLLGEVCED FLQPGPRAGS PDAGAADVFS 60 RFLADHQIRD KPHTHFPDTA ALASQQQQQQ QMMFHSQQQQ QQMAAVESGL YRTVSSGMEA 120 PTAGAGAGGS SLIRQSSSPA GFLNHLNMDN GYGGMLRAGM GVGFRNGASA AAAADSTAGG 180 RLKGQLSFSS RQGSLMSQIS EMGSEELGGS SPEGAGGGRG YIPGYPMSSG WEDSSSLMSE 240 SLSGMKRPRD SSEPGQSGLT QQFSLPKTSS EMAAIEKFLQ FQDAVPCKIR AKRGCATHPR 300 SIAERVRRTK ISERIRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQKQVK VLNESRANCT 360 CSASKNPQYS G* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G204700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354634 | 0.0 | AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973867.1 | 0.0 | transcription factor bHLH130 isoform X1 | ||||
TrEMBL | K3YI81 | 0.0 | K3YI81_SETIT; Uncharacterized protein | ||||
STRING | Si013950m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G204700.1.p |
Entrez Gene | 101777762 |