PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G191900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 294aa    MW: 30398.1 Da    PI: 9.5755
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G191900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0582101221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ Cgk F ++  L  H+r
  Seita.6G191900.1.p  82 PCTECGKQFASWKALFGHMR 101
                         6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.6E-481103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.47181108IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-682103No hitNo description
PfamPF139122.6E-883105IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-483103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.17E-6197224No hitNo description
PfamPF139127.8E-11202226IPR007087Zinc finger, C2H2
SMARTSM003551.2202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369202224IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MATPVQPAAS RSPPRPPPPP LPLPPPPPQH DTTLTLALAL PPPAFACALS RARCKRGGRG  60
RTALPAPLIR QGAVLAHGDT LPCTECGKQF ASWKALFGHM RCHPERQWRG ITPPPHFRHN  120
HHHQQHAVGV PPLAVAAAAA GQQFTVQERE IAASLLMLAG ARTPGVGKGK KGVLASSSAK  180
KESCSTPASS PTAAAPPKCD DHKCSVCARG FATGQALGGH KRCHWEKACA EVMAVATPSS  240
CSPLLATSEV AAAAAAATTL DLNLPPPGTM LALPWKSDED GSLNAALDLK LGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G191900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751886e-41EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683515.10.0zinc finger protein ZAT2
TrEMBLA0A368RNC20.0A0A368RNC2_SETIT; Uncharacterized protein
STRINGSi015086m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.18e-25C2H2-like zinc finger protein