PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G181700.1.p
Common NameLOC101768441, SETIT_014237mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 278aa    MW: 30014.4 Da    PI: 5.24
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G181700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.2e-21139188255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAaka+++a+ +++g
  Seita.6G181700.1.p 139 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAAKAYDRAAIEFRG 188
                         8********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.1E-32139196IPR001471AP2/ERF domain
SMARTSM003803.3E-37139202IPR001471AP2/ERF domain
PfamPF008473.0E-14139188IPR001471AP2/ERF domain
PROSITE profilePS5103225.132139196IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23139197IPR016177DNA-binding domain
PRINTSPR003673.0E-11140151IPR001471AP2/ERF domain
CDDcd000181.16E-29142196No hitNo description
PRINTSPR003673.0E-11162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTNRIFSAMA ANQAYMIRFD GHLDDPSPSS AGAEPPEVSQ QQPPPPFAGR VISPEQEHQV  60
IVAALLHVVS GYTTPPPEIF PAAAAGAACR VCGMERCLGC EFFGGEGAEV IALDGGAAEN  120
NNAAVAAGGQ RRRRKKKNKY RGVRQRPWGK WAAEIRDPRR AVRKWLGTFD TAEEAAKAYD  180
RAAIEFRGPR AKLNFPFPEQ LAHDEASNGD ASAAARSSDN TQSPSLCSGD AEERGQPAEW  240
PPRGGQETGE QLWEGLQDLM KLDEGELWFP PTSSAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21136197264ATERF1
3gcc_A3e-21136197264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RRRRKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G181700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973673.10.0ethylene-responsive transcription factor ERF109
SwissprotQ9SZ061e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLK3YJ180.0K3YJ18_SETIT; Uncharacterized protein
STRINGSi014237m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-27redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]