PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G178200.1.p | ||||||||
Common Name | LOC101760339, SETIT_013598mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GeBP | ||||||||
Protein Properties | Length: 504aa MW: 54900.5 Da PI: 10.8705 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 94.2 | 1.3e-29 | 249 | 346 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 ++ r+ws eDei++L +l++++ak+g+ + +d+ ++++++++++ +++s++ql++K+rrLK+K+k ++a++g++p++ ++h+++++e Seita.6G178200.1.p 249 RPPRVWSPEDEITILSALVEYRAKKGQlpASIQDTGKVHSQISGQLTANASTTQLSDKVRRLKHKYKLLFTRARNGRDPDLPTQHERDVYE 339 578************************777888********************************************************** PP DUF573 91 lskkiWg 97 lskk+Wg Seita.6G178200.1.p 340 LSKKVWG 346 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-28 | 251 | 346 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MAPKRPAAAA DAAAGSGSDA SDGGAGDVRY SRRRRRRNSP SPIPSRSPSR SRSRSRSKTP 60 PPNLRPNAAA LSSTPTSAGA DFVAASDSDA DAGGGRGRVS SPRRRDRKGA PRDRLDSDAD 120 ADASAGGRAP SPRRRRKRSP SFHSDSDADA GGRVPSPRRN RERTPRLHSD SDSDNSAAAA 180 GSEDDGAGAG DASSLPRARR SSRIETSNIK PVSTRPMEAP RRAPAGSSQR RSKRRHSSPG 240 RASPEHQKRP PRVWSPEDEI TILSALVEYR AKKGQLPASI QDTGKVHSQI SGQLTANAST 300 TQLSDKVRRL KHKYKLLFTR ARNGRDPDLP TQHERDVYEL SKKVWGFKSG DILGGSHAYE 360 DTGDAESNEE QEIEESDDAM ENGWEHHERP GKKPKAFRFE NGNGNALAAV GRASHGNGSG 420 RDDAEKGKQM YPYLWEAVAE LSKEHPSGPI FRKAFGVLEK SKAQAMEEKL RKFRMSEIRQ 480 QLHRMDLMKE TMRMVLDALE GSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 36 | RYSRRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G178200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702606.1 | 0.0 | STOREKEEPER protein | ||||
TrEMBL | K3YH80 | 0.0 | K3YH80_SETIT; Uncharacterized protein | ||||
STRING | Si013598m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2671 | 35 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 1e-13 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G178200.1.p |
Entrez Gene | 101760339 |