PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G161100.1.p | ||||||||
Common Name | LOC101777207, SETIT_013999mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ZF-HD | ||||||||
Protein Properties | Length: 356aa MW: 36740.7 Da PI: 7.6314 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.5 | 1.3e-32 | 42 | 96 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +Y+eClkNhAaslGgha+DGCgEfmp+++++ +++a+l+CaACgCHRnFHRr +e Seita.6G161100.1.p 42 VYRECLKNHAASLGGHALDGCGEFMPTPEADpADPASLRCAACGCHRNFHRRLPE 96 7*****************************99*******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.7E-27 | 42 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-22 | 43 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.858 | 43 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.7E-30 | 43 | 93 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.21E-16 | 200 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 205 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.9E-22 | 213 | 269 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEAVVNVKYR PAMFLNGAAG AAAVAKKMRP AAAAWGAGEA GVYRECLKNH AASLGGHALD 60 GCGEFMPTPE ADPADPASLR CAACGCHRNF HRRLPEAPPS PPLLALPPPL PPAQPAPALQ 120 HVMREAPEDR LPAAFDDDET DESDEGSDFD EDRPLSPLPA PAMGPPGYLQ PAPHMLLALS 180 TGAPGASIPA VVPRPPASLG PMPAPGAASA AARKRFRTKF SPEQKQRMQA LSERLGWRLQ 240 KRDEAVVEES CREIGVTKGV FKVWMHNNKH NFVGGHSARR SASAAAATGA APPILPPPHA 300 AAVHPSAPAA PAAPPPPPPA PVHADFNING AASAADYFRV QPATATASGG SPQSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-21 | 213 | 271 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G161100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964070 | 1e-115 | EU964070.1 Zea mays clone 275696 ZF-HD homeobox protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973533.1 | 0.0 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q6ER21 | 4e-76 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | K3YID0 | 0.0 | K3YID0_SETIT; Uncharacterized protein | ||||
STRING | Si013999m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 4e-49 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G161100.1.p |
Entrez Gene | 101777207 |