PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G145000.1.p | ||||||||
Common Name | LOC101768178, SETIT_014228mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 281aa MW: 30601.7 Da PI: 4.5507 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.6e-20 | 83 | 136 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k Seita.6G145000.1.p 83 KKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 136 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.5 | 1.6e-42 | 82 | 173 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl++eqv+lLE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+dy++Lk+aydal+++++ L +++++Lr+++ Seita.6G145000.1.p 82 EKKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDYDRLKAAYDALAADHQGLLADNDSLRAQV 172 69**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 Seita.6G145000.1.p 173 V 173 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.42E-19 | 77 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.204 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-19 | 81 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.32E-18 | 83 | 139 | No hit | No description |
Pfam | PF00046 | 4.3E-17 | 83 | 136 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 84 | 145 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.6E-6 | 109 | 118 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-6 | 118 | 134 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.9E-16 | 138 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDPGRVGVDS GGARRGGGGG GGGGAQMLLF GGGGSANSNG FFRGVPMAVL GMDDAVRVGK 60 RPFFTTHEEL MEEEYYDEQA PEKKRRLTAE QVQLLERSFE EENKLEPERK TELARRLGMA 120 PRQVAVWFQN RRARWKTKQL ETDYDRLKAA YDALAADHQG LLADNDSLRA QVVTLTEKLQ 180 GKETSPSATN AAQEADDLDE HTAASGTEKL LAQQLRDDLL SSGDCTGHGV LSSEEEDGGV 240 VSDEGCSFHL PDALFAAAEV IHHGAEEAQL FNWTSWYWNN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G145000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037899 | 0.0 | BT037899.1 Zea mays full-length cDNA clone ZM_BFb0201F17 mRNA, complete cds. | |||
GenBank | EU959701 | 0.0 | EU959701.1 Zea mays clone 219449 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds. | |||
GenBank | KJ727734 | 0.0 | KJ727734.1 Zea mays clone pUT5675 HB transcription factor (HB7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973433.1 | 0.0 | homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q6ZA74 | 1e-113 | HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | K3YJ09 | 0.0 | K3YJ09_SETIT; Uncharacterized protein | ||||
STRING | Si014228m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-53 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G145000.1.p |
Entrez Gene | 101768178 |
Publications ? help Back to Top | |||
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