PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G132800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 347aa    MW: 36217.4 Da    PI: 6.7399
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G132800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61.1e-27131191259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqK++ g+++pr+YYrCt++   gCp++k+v+r++ dp +++++Y+g+H+++
  Seita.6G132800.1.p 131 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqGCPATKQVQRTDADPALFDVVYHGDHTCR 191
                         8***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.63125188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-28127191IPR003657WRKY domain
SuperFamilySSF1182903.92E-25129192IPR003657WRKY domain
SMARTSM007745.4E-40130192IPR003657WRKY domain
PfamPF031066.5E-27131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MADGGECGAR AQLVSELCRV QDLVRRLELL LHAPSDAASV DLCHRLVHEI VALTDRSIGM  60
ARSPDLAAHF LLPAAQQQQP LSGAPSPLSD AGSEQPFRGA SPKKRKATAR WTSQQVRVAA  120
AGGGAAEGPA DDGHSWRKYG QKDILGAKHP RAYYRCTHRN SQGCPATKQV QRTDADPALF  180
DVVYHGDHTC RPSSAASAAA ARRAPHPQHN PHAQAALQGL AARLTVATAT DNAMISGAAP  240
ALPPMTPESF PARGASSPWS LAASPVGSDY SNGCPHGVSP CPVPGYNADW GSDGGDLQEA  300
VSAFVAASSG AAHLPALDND EFMSLECFNF DQSFDMGGAM PSLFYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-23131191969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G132800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820899.11e-145probable WRKY transcription factor 41
TrEMBLA0A368RL200.0A0A368RL20_SETIT; Uncharacterized protein
STRINGSi015433m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-27WRKY family protein