PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G044300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 438aa    MW: 46288.6 Da    PI: 12.4736
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G044300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.9e-1182123341
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                         ++k +rr+++NReAAr+sR+RKka+i++Le+   k ++Le+e
  Seita.6G044300.1.p  82 RDKTQRRLAQNREAARKSRLRKKAYIQNLETsrlKLAQLEQE 123
                         79****************************833344555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-879134No hitNo description
SMARTSM003380.002780140IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.03682124IPR004827Basic-leucine zipper domain
PfamPF001704.9E-882123IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-684132No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
PROSITE patternPS000360156171IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGIYERQRHM VAAGLWGEPF RPDGDAFVAP LAAAAPVTGV AVDVVVETEA KFALQAQDEA  60
VPPVEEVAPS SDSFGHDDAR PRDKTQRRLA QNREAARKSR LRKKAYIQNL ETSRLKLAQL  120
EQELTMARRQ QVQLRIIQES KHIAGTPARR PIANRRCHCR NSAAAGTRRR RSRVPRATRG  180
PARDGVRAGV RAVGGGAEEA GRGAARCAAV GRAGAPAAAP RRRRGGALRR ALRRQVARRP  240
RGRRLRALRR VARPRRALLP LDRRVPALGA PPGPGAAAGP AGGAAGVGGA RAAEHGEAAG  300
GRAVAGYEQA AADARRRAPD RRRAGRRRRV RGAADGQRGR QARRPRQLRG PGGSSPAADA  360
AEHEQDPDAA AGGAGAPGAR RLLPAAARAQ LTLGGAPAGA GVTCAMGGRR RRRRRGSGIG  420
KGTCARGWRG WRPDRPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314328RRRAPDRRRAGRRRR
2408414RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G044300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368RIE00.0A0A368RIE0_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5929022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.13e-20bZIP family protein