PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G024700.1.p

Common Name

SETIT_014404mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 238aa MW: 27515.4 Da PI: 10.0545

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G024700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.2	2.2e-16	139	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +t+s+v+ +l lp +f+++h +k ++ t+tl de+ + + + ++ + l++GW++F +++L +gD ++F+l++r++f Seita.6G024700.1.p 139 FVKPMTQSHVTGGFWLGLPTPFCRKHL-PK-RDETITLVDEEDDESDTLY--LARKMG--LSAGWRGFSIEHKLVDGDCLIFQLIERTKF- 222 89**********************5.33.5669*9999999888..444433..9**********************98888. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v ++r+ Seita.6G024700.1.p 223 -KVYIIRA 229 .8888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.26E-23	132	229	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.9E-20	133	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.67E-27	137	228	No hit	No description
SMART	SM01019	7.2E-19	139	230	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.476	139	230	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-14	139	229	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGRKAQRKEM AAEAVSYEEQ RRRQVEANKR KLEELQLHHL SAAVREAAVK PSPAKKRKAR 60 VPRDAAAEPL RRSGRVANLP DKPKYREEVL DFGRKVRRTY SSGRKDLDNR VYATDEERTH 120 AITKAEELEE ELGSRFPIFV KPMTQSHVTG GFWLGLPTPF CRKHLPKRDE TITLVDEEDD 180 ESDTLYLARK MGLSAGWRGF SIEHKLVDGD CLIFQLIERT KFKVYIIRAR SYYKNED*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G024700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972573.1	1e-175	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-124	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A368RHI4	1e-174	A0A368RHI4_SETIT; Uncharacterized protein
STRING	Si014404m	1e-167	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-71	B3 family protein

Link Out ? help Back to Top
Phytozome	Seita.6G024700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]