PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G017000.1.p
Common NameLOC101756799, SETIT_014163mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 299aa    MW: 30661.5 Da    PI: 10.5696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G017000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.5e-31233291259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YYrC+sa gCp++k+ver+a+dp ++++tYeg+H+h+
  Seita.6G017000.1.p 233 ADDYSWRKYGQKPIKGSPYPRGYYRCSSAkGCPARKHVERAADDPATLVVTYEGDHRHD 291
                         69*************************999****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-7182217IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.3E-32227293IPR003657WRKY domain
PROSITE profilePS5081132.661227293IPR003657WRKY domain
SuperFamilySSF1182901.96E-26229293IPR003657WRKY domain
SMARTSM007741.8E-36232292IPR003657WRKY domain
PfamPF031061.4E-26234290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAVDLMSCGG AYEHLAFQEA AAAGLRSLEL LASSLSPRAA GRAESPPLGE IADQAVSRFR  60
RVINLLDRTG HARFRRAPAV SPAAETTPPA SPRPAPPAVA APPQKNSLTL DFTKPSPAAA  120
TKQAAAPAVS ATSTSFLSSV TAGGEGSVSK GGSLAVSSGK PPLPKRKHPA ACPTPAAPGA  180
HHHHGEPGAA GRCHCSKKPK RSRQGLSRRT VRVPAVGTAA PGSQAPASSD IPADDYSWRK  240
YGQKPIKGSP YPRGYYRCSS AKGCPARKHV ERAADDPATL VVTYEGDHRH DGPAGHAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-24218294378Probable WRKY transcription factor 4
2lex_A6e-24218294378Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G017000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972520.10.0probable WRKY transcription factor 17
TrEMBLK3YIU40.0K3YIU4_SETIT; Uncharacterized protein
STRINGSi014163m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-50WRKY DNA-binding protein 11