PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G466800.1.p
Common NameLOC101758556, SETIT_002846mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 220aa    MW: 23601.5 Da    PI: 6.3915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G466800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.7e-1551103156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                         + y+GVr +    rWv+e+r+p     +  +r++lg++ t+e+Aa+a++ a+ +l+g+
  Seita.5G466800.1.p  51 PVYRGVRARAGGSRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAAIALRGA 103
                         68********9999****9999.....446*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-1251102IPR001471AP2/ERF domain
SMARTSM003805.1E-2352117IPR001471AP2/ERF domain
PROSITE profilePS5103220.99552111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2552113IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1752113IPR016177DNA-binding domain
PRINTSPR003675.9E-65364IPR001471AP2/ERF domain
CDDcd000182.34E-2153113No hitNo description
PRINTSPR003675.9E-67692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MADAAEDSSS SASSSSLSPP TSPPHQHQQQ QNQLPAKRRA GRKKFRETRH PVYRGVRARA  60
GGSRWVCEVR EPQAQARIWL GTYPTPEMAA RAHDVAAIAL RGALAADLNF PDSAHTLPRP  120
RTAAPDDIRC AAAQAAELYR PAAHHLIATS SSTAAPPRPL ALPPPEPSAC FLDEDAIFDM  180
PGLIDDMARG MLLTPPAMGR GLDWGAVDDD VDCTLWMDD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G466800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276711e-115KJ727671.1 Zea mays clone pUT5598 AP2-EREBP transcription factor (EREB141) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971403.11e-157dehydration-responsive element-binding protein 1F
SwissprotA2WZI41e-81DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z51e-81DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLK3XLS31e-155K3XLS3_SETIT; Uncharacterized protein
STRINGSi002846m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-39C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]