PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G443700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 168aa    MW: 18317.3 Da    PI: 8.0835
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G443700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB143.55e-4539129494
               NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                         +d++lPianv+rimk++lP +akisk aket+qec++ef++fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre e
  Seita.5G443700.1.p  39 HDNLLPIANVGRIMKEALPPQAKISKRAKETIQECATEFVGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYADAMRRYLQRYRESE 129
                         699**************************************************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.8E-4239132IPR009072Histone-fold
SuperFamilySSF471132.51E-3340132IPR009072Histone-fold
PfamPF008083.2E-2443106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-147088No hitNo description
PRINTSPR006152.3E-1489107No hitNo description
PRINTSPR006152.3E-14108126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSENFNFIGP AQVGQSQPQP QNLSRASTSR DGNSGAVGHD NLLPIANVGR IMKEALPPQA  60
KISKRAKETI QECATEFVGF VTGEASERCR RERRKTINGD DICHAMRSLG LDHYADAMRR  120
YLQRYRESEE LAAALNSGSG SGSGGGIQID VRAELSIFRG HEQQDRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-3839127492Transcription factor HapC (Eurofung)
4g92_B9e-3839127492Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G443700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9742442e-95JN974244.1 Zea mays HAP3-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972332.11e-121nuclear transcription factor Y subunit B-4
SwissprotO040272e-43NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A368RFW21e-120A0A368RFW2_SETIT; Uncharacterized protein
STRINGSi004211m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.14e-44nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]