PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G420700.1.p
Common NameSETIT_000062mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 1331aa    MW: 146935 Da    PI: 8.7552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G420700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001412961322123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          y+Cp   Cg++F+  s++ rH r+  H
  Seita.5G420700.1.p 1296 YVCPepECGQTFRFVSDFSRHKRRtgH 1322
                          99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005454.7E-151859IPR003349JmjN domain
PROSITE profilePS5118313.731960IPR003349JmjN domain
PfamPF023755.2E-132053IPR003349JmjN domain
SMARTSM005582.1E-46184353IPR003347JmjC domain
PROSITE profilePS5118434.838187353IPR003347JmjC domain
SuperFamilySSF511972.42E-24200350No hitNo description
PfamPF023733.5E-36217335IPR003347JmjC domain
Gene3DG3DSA:3.30.160.608.0E-412111235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551512131235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90712361265IPR007087Zinc finger, C2H2
SMARTSM003555.512361260IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012381260IPR007087Zinc finger, C2H2
SuperFamilySSF576674.36E-1412471300No hitNo description
Gene3DG3DSA:3.30.160.601.7E-912641290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.7E-412661290IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.71812661295IPR007087Zinc finger, C2H2
PROSITE patternPS00028012681290IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-1012911318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.7412961322IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84512961327IPR007087Zinc finger, C2H2
PROSITE patternPS00028012981322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1331 aa     Download sequence    Send to blast
MPSVQGELVP PWLKSLPLAP EFRPTASEFA DPIAYLLKIE PAAAPFGICK VVPPLPPPPK  60
RTTLGNLSRS FAALHPGDPS PTFPTRHQEL GLCPRRPRPA LKPVWHSPRR YTLPQFEAEA  120
GASRKALLAR LDVPPSRHLS PLDVEALFWR SSADRPVAVE YASDMPGSGF APCDARPTQL  180
PAANVGETAW NMRGVARSPA SLLRFLREEV PGVTSPMLYV AMLFSWFAWH VEDHDLHSLN  240
YLHSGAPKTW YGVPRDAALA FEDVVRVHGY GGEVNPLETF AMLGDKTTVM SPEVLVRSGI  300
PCCRLVQNAG EFVVTFPGSY HSGFSHGFNY GEASNIATPE WLRAAKEAAV RRASINRPPM  360
VSHYQLLYEL ALSMCLRDPS GGAMEPRSSR LKEKKKGEGE QLVKKIFVRN VIEDNKLLNH  420
FLSDGSSCII LPTSSNNGSA LSTLLSKSQS TTSRVSDVQC SSTETPKDSG HLPMNGALGK  480
NGELSSSKEI SASVCSGKEV PPTACMHDCV NMPGSLDANN AESDKGDVNN ADGILDQGLL  540
SCVTCGILSF SCVAVIKPRE CAAKWLMSAD SSLINKQLAG SGESHLIDAL QGSDFEMNRN  600
RIISDAASLD RNSALDLLAS AYGDASDSDE DVLNKKIQAS NVSNELISHT IESPPNSSSN  660
GGCDGTNMSS SSKERQQGPS SQSSQCIGNT NNGPKGVRTR NKYQLKMVLS EGFLPKDIYS  720
EMQKKVQCEP SRSNMTSTEP IHGTDCQASR NSATVCMDGN RSTTTTVDNL ATSIVKPDKD  780
SSRMHVFCLE HAIEVEKQLR TIGGAHIFLL CRPEYPKIEV EAKLLAEEME VKYDWKDIVF  840
KEASIEDRKK IQEVVQDEET IPTHSDWAVK LGINLYYSAN LAKSPLYNKQ LPYNRVIYKA  900
FGCSSPNNSP AKLKTYARRQ GRAKKIVLAG RWCGKVWMSN QVHPFLAHRI ESHEPEEIDE  960
IWSCYEKSNA DHVEHSSREA TSPRKSSSRA IEEKTSNREK EPLEKASIKK PKYIEEDNSE  1020
ALESAEKASA GKSNCRTSVE KMGKRKKELA EKANTKKLKH TEEDNSKALT GASEASPPLP  1080
SGMVVRSSSR IANRKNMLKS KMEEEDNGPA SHPKAKVEED SNDPAICSSA RSLRQNINVK  1140
KQTKKSRAEK RKAPSSAALK DEEQISDVKG FSVTKQQLSS HKQKNKVEET QQMKKTRERK  1200
GAPPSSPKHG EEYACDIEGC SMSFGTKQEL SLHKRDICPV QGCRRKFFSH KYLLQHRKVH  1260
NDDRPLKCSW KGCDMAFKWP WARTEHMRVH TGDRPYVCPE PECGQTFRFV SDFSRHKRRT  1320
GHAAKVKAKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-70123748353Transcription factor jumonji (Jmj) family protein
6ip4_A1e-70123748353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110431058KRKKELAEKANTKKLK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G420700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970976.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A368RF070.0A0A368RF07_SETIT; Uncharacterized protein
STRINGSi000062m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]