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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G418700.1.p |
Common Name | LOC101752878, SETIT_000959mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
GRAS |
Protein Properties |
Length: 539aa MW: 57469.1 Da PI: 6.5076 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G418700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 344.4 | 2e-105 | 164 | 537 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely....kalppsetseknsseelaalklfsev 87
lv+lL++cAeav+ +d ++a alL +l+ a +g+++qR+a++f+++La rla + a+ ++ + + al l +e+
Seita.5G418700.1.p 164 LVQLLVACAEAVACRDRAQAAALLRELQVGAPVHGTAFQRVASCFVQGLADRLALAHPPALgpasMAFCIPPSCAGRDGARGEALALAYEL 254
689**************************************************9865544311002222233333336777788899**** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173
+P+l+f+h++aN Ilea+ege+ vH++D++++ G QW Ll+ La+R++ +p ++R+Tgvg+ ++++++g+ L+ +Ae lg
Seita.5G418700.1.p 255 CPYLRFAHFVANASILEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARAGAKPkRVRVTGVGA----PLDTMRAVGRELEAYAEGLG 341
*****************************98762222567*************66665*********....99****************** PP
GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
+++ef++ v ++le+l+ ++L v +Ea+a+++vl+lh +++es + +vL++v++lsP+ +v+veq+a hn++ Fl rf+eal+yy
Seita.5G418700.1.p 342 MRLEFRA-VDRSLESLHADDLGVAADEAVAISSVLELHCVVKESRGALN---SVLQTVRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYY 428
*******.799******************************88877777...8************************************** PP
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
+a+fd+l+a lpr + r+ vE++ +g ei+nvv ceg +r+erhe++ +Wr+r+++aGF++vp++ + a+ l++ + + gy+v ee
Seita.5G418700.1.p 429 AAVFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGVARVERHERADQWRRRMSRAGFQSVPIRMA--ARAREWLEENAgGGGYTVAEE 517
*****************************************************************865..567888888887999****** PP
GRAS 355 sgslvlgWkdrpLvsvSaWr 374
+g+lvlgWk++pL+++S+W+
Seita.5G418700.1.p 518 KGCLVLGWKGKPLIAASCWK 537
*******************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MGMPEQPCRS TPNSFTTSFG SSQQMHHLPQ HDAALCTEPG LGFPYYYGTD QQDAAFDGDE 60 VDLGFRASKV TKVDYYSSPY QPSWPLARAD VAAAAAESSR VRKQRFRDVL ESCKQKVEAM 120 EAMESPVAFQ EGEDGGVAGD GGGAAAGGGG GGGGGGGGAD GMRLVQLLVA CAEAVACRDR 180 AQAAALLREL QVGAPVHGTA FQRVASCFVQ GLADRLALAH PPALGPASMA FCIPPSCAGR 240 DGARGEALAL AYELCPYLRF AHFVANASIL EAFEGESNVH VVDLGMTLGL DRGHQWRGLL 300 DGLAARAGAK PKRVRVTGVG APLDTMRAVG RELEAYAEGL GMRLEFRAVD RSLESLHADD 360 LGVAADEAVA ISSVLELHCV VKESRGALNS VLQTVRKLSP RAFVLVEQDA GHNGPFFLGR 420 FMEALHYYAA VFDALDAALP RYDARRARVE QFHFGAEIRN VVGCEGVARV ERHERADQWR 480 RRMSRAGFQS VPIRMAARAR EWLEENAGGG GYTVAEEKGC LVLGWKGKPL IAASCWKC*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003791 | 0.0 | AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12. |
GenBank | AP006757 | 0.0 | AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |