PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G394300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 351aa    MW: 36529.2 Da    PI: 8.0403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G394300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-20123172255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Seita.5G394300.1.p 123 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 172
                         7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.686123180IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22123181IPR016177DNA-binding domain
PfamPF008471.1E-13123172IPR001471AP2/ERF domain
SMARTSM003801.3E-36123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-33123181IPR001471AP2/ERF domain
PRINTSPR003671.1E-11124135IPR001471AP2/ERF domain
CDDcd000183.90E-15131182No hitNo description
PRINTSPR003671.1E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MPGLCAVTVS RTTTSNFSVP FSSAAFFYCF LLLLHSKNIS LHVGGDRDRS IGALYMLSQL  60
QLCNAIFSCS ATSHAHAKDV LGSEQGSDTQ TSAAAMEQEH HSRSHAAAAA LSGHEGPETP  120
RRRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFETAEAAA RAYDEAALRF RGSRAKLNFP  180
EDARLHPAST TPAAPAAPAS EPIAGAGAAS TSPAGYHPGA AQGVDYLRYQ MLLQGAARNQ  240
GTLLPFYAGG GGGMSNPYGG GGGAPSNPYG GGGGGGNTSG FLGSYYSFPP SSVSVATVPS  300
STSSAPGYYY SSPHDTQQSE SSAAAAEDWN WASSLIHWAN SGYPTPPHTQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-23124180663ATERF1
3gcc_A3e-23124180663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G394300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914074e-98FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682219.10.0dehydration-responsive element-binding protein 1C
TrEMBLA0A368RDM10.0A0A368RDM1_SETIT; Uncharacterized protein
STRINGSi002010m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-20ethylene response factor 110