PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G392800.1.p

Common Name

LOC101752604, SETIT_002230mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 326aa MW: 34438.3 Da PI: 4.6032

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G392800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	1e-37	32	88	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Seita.5G392800.1.p 32 APNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 88 568***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-37	15	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.6E-32	32	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MLSSHHEAML PYAPRPPSLL VDRRYKQGGE TAPNCPRCDS PNTKFCYYNN YSLSQPRYFC 60 KGCRRYWTKG GSLRNVPVGG GCRKNRRGKS SARSAAESMA SGRDAAAFGH RFPGPVRPDL 120 VLEGMVGNPA NPGQAIPDMP AAADGSTIDL AMLYAKFLNH PAAEAGAGAV TPESAGQVDE 180 AFDTFSASSD LSPGVLAPAQ FDPCHDGFGE WLGPVSSTDP TSTAASTSSA TTMLCSDVSV 240 QAALGELNFA MDQSCFDSLG LPTDVGNLSS WCSIVPSLST LEDTKYDSLD SFPDDALSLH 300 EGMISGPDNH DWSVDCQGLE ALYMP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G392800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582408	0.0	KC582408.1 Sorghum bicolor dof11 protein (dof11) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682290.1	0.0	uncharacterized protein LOC101752604
TrEMBL	K3XK07	0.0	K3XK07_SETIT; Uncharacterized protein
STRING	Si002230m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Seita.5G392800.1.p
Entrez Gene	101752604