PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G365500.1.p
Common NameLOC101782717, SETIT_000906mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 553aa    MW: 58901.4 Da    PI: 7.1086
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G365500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33219275259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  Seita.5G365500.1.p 219 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGTHNHA 275
                         8****************************************.***************7 PP
2WRKY105.92.1e-33381439159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  Seita.5G365500.1.p 381 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 439
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28210277IPR003657WRKY domain
PROSITE profilePS5081123.479213277IPR003657WRKY domain
SuperFamilySSF1182904.05E-25214277IPR003657WRKY domain
SMARTSM007741.1E-35218276IPR003657WRKY domain
PfamPF031063.8E-25219274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37366441IPR003657WRKY domain
SuperFamilySSF1182901.83E-29373441IPR003657WRKY domain
PROSITE profilePS5081138.687376441IPR003657WRKY domain
SMARTSM007741.2E-38381440IPR003657WRKY domain
PfamPF031069.2E-26382439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MTTSSSGSIE APANSRPGSF SFASTSFTDM LGGSAGAAGG ASRYKAMTPP SLPLSPPPVS  60
PSSFFNIPGG LNPADFLDSP ALLTSSIFPS PTTNAFASQQ FSWLSPQGAE QGAKEEQRQS  120
YPDFSFQTAP TTEEAVRTTT TFQQPPVPPA APLGEDAYRS QQQQPWGYQQ QQGMDAGSNQ  180
AAYGGPFQAG SSDAGAIVAH VPASGGGYSQ AQSQRRSSDD GYNWRKYGQK QVKGSENPRS  240
YYKCTFPSCP TKKKVERSLD GQITEIVYKG THNHAKPQNT RRNSSAAAQL LLQGGGDASE  300
HSFGGTPVAT PENSSASFGD DEAGAGSPRA GNAGGDEFDE DEPDSKRWRK DGDGEGISMA  360
GNRTVREPRV VVQTMSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTA GCPVRKHVER  420
ASHDLRAVIT TYEGKHNHDV PAARGSAAAL YRPAPPPPAD NYLAAPAGVR PPAMAYQTGQ  480
QYGFGGQSSF GLGAHAPAQS GGFGFSSGFD NAMGSYMSQH QQQQRQNDAM HASRAKEEPR  540
EDMFFPQSMM YN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36203442278Probable WRKY transcription factor 4
2lex_A4e-36203442278Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G365500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539940.0BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970421.30.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLK3XG860.0K3XG86_SETIT; Uncharacterized protein
STRINGSi000906m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.15e-97WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]