PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G361900.1.p

Common Name

LOC101769236, SETIT_002121mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WRKY

Protein Properties

Length: 339aa MW: 35911.2 Da PI: 6.3966

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G361900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	63.3	4.1e-20	123	184	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 Dgy+WrKYGqK +++++fpr YYrC+++ +C+++k+v++++ dp ++Y ++H+++ Seita.5G361900.1.p 123 YDGYQWRKYGQKRITKTQFPRCYYRCSFHrerNCRATKQVQQCSgGDPPQYLVMYFNDHTCD 184 59***********************99999****987636999*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-23	107	185	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-21	117	185	IPR003657	WRKY domain
SMART	SM00774	3.1E-30	122	185	IPR003657	WRKY domain
Pfam	PF03106	1.3E-21	124	184	IPR003657	WRKY domain
PROSITE profile	PS50811	16.168	124	186	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MQGQSRLAVS GGGDISSGSE GEHEAVIREL TRGRQLTARL RDEALRALRG QGQAEATAAF 60 ILQEVSRAFT VCINIMGSPA RAPPPPPETP ARLSPTATEL LVPRRNREDS IPREQTVTSS 120 PHYDGYQWRK YGQKRITKTQ FPRCYYRCSF HRERNCRATK QVQQCSGGDP PQYLVMYFND 180 HTCDTAASWE PEAAASAANP AAAMMDLSGA AGGLVARLQG ARGVQEEHER QVLVSSLACV 240 LGAQQFAHHS PPDAAGGITS GASAAAVNVP PQRARTRDAP APATAPAAAS APVVDDAAAE 300 MPRLDVDVVG LDVMDYGVTG ELCFGESYGL PDGGGLPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-13	124	183	10	68	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G361900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063861	2e-72	BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBank	EU956487	2e-72	EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBank	JX469948	2e-72	JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970387.1	0.0	probable WRKY transcription factor 4
TrEMBL	K3XJP8	0.0	K3XJP8_SETIT; Uncharacterized protein
STRING	Si002121m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12538	28	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22570.1	1e-16	WRKY DNA-binding protein 38

Link Out ? help Back to Top
Phytozome	Seita.5G361900.1.p
Entrez Gene	101769236