PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G361800.1.p
Common NameLOC101768830, SETIT_003782mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 333aa    MW: 35641.8 Da    PI: 6.9437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G361800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.71.5e-20105165259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSS..TTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaed..pkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK++++ +f+r YYrC  + +C +kkkv++++    p ++e+tY +eH+++
  Seita.5G361800.1.p 105 KDGYQWRKYGQKKIQNCNFSRYYYRCNRHrRCLAKKKVQQQDGSllPPMFEVTYVNEHTCH 165
                         8*************************9888*********998765578***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-2396166IPR003657WRKY domain
SuperFamilySSF1182905.75E-20100165IPR003657WRKY domain
SMARTSM007744.5E-24104166IPR003657WRKY domain
PfamPF031061.1E-21105165IPR003657WRKY domain
PROSITE profilePS5081114.435106167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAFDPVAKQL SEVLAGGYHR NTQLQALLSR PLDSRGQEVA MEFSQELSRV FAVSMAMLNS  60
NAAAPEVRTG NSFGVSTPVK DQRARSDIGE VVAPSKKEIT PSPHKDGYQW RKYGQKKIQN  120
CNFSRYYYRC NRHRRCLAKK KVQQQDGSLL PPMFEVTYVN EHTCHVLRDT DDAAATMAPP  180
GTTSRHRAGA ARSSNGGDLF DLFPHVIGGG GGGGGSAEEE NDAIVSCLAT VVSGAAPSSW  240
WTPAAEATAG DPAAAFVAPA GRPASVDGSV ADDGGMMTTM VIDDTGFSSF CPVEEACQHQ  300
LVANHHRDVH MDVARLADTV WPQHAGGAWR RA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G361800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972234.10.0WRKY transcription factor WRKY62
TrEMBLK3XPF80.0K3XPF8_SETIT; Uncharacterized protein
STRINGSi003782m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-10WRKY DNA-binding protein 70