PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G361600.1.p | ||||||||
Common Name | LOC101768430, SETIT_004791mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 231aa MW: 25903 Da PI: 6.9415 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 79.5 | 3.7e-25 | 45 | 106 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+++g+++pr YYrCt++ gCp++k+ve++ ++dp ++ ++Y++eH+++ Seita.5G361600.1.p 45 HDGYQWRKYGQKMIRGNTYPRCYYRCTFHqdhGCPATKHVEQTnSQDPPLFRVIYTNEHTCS 106 7**************************998999*******975268**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.4E-26 | 30 | 107 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-23 | 38 | 106 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-36 | 44 | 107 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.667 | 46 | 108 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-25 | 46 | 105 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAGFSGSSNG THKRLLQDCS SYAQEHAKKR VRISTRTEYT YAPYHDGYQW RKYGQKMIRG 60 NTYPRCYYRC TFHQDHGCPA TKHVEQTNSQ DPPLFRVIYT NEHTCSSTHV SDYMASSIHI 120 QQIADASLRK AETEIPSLTH CGAGHGLIKE EKDAIVSSLL TVTNGCDVAK SDVGRAAMQE 180 NTPAPMARNI YEAIPSVSPV QLAPSDELKM DFVEPLESHW FEPLDLGWFI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-13 | 32 | 103 | 2 | 69 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G361600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972233.1 | 1e-176 | probable WRKY transcription factor 29 | ||||
TrEMBL | K3XS92 | 1e-175 | K3XS92_SETIT; Uncharacterized protein | ||||
STRING | Si004791m | 1e-176 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11814 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66600.1 | 2e-19 | ABA overly sensitive mutant 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G361600.1.p |
Entrez Gene | 101768430 |