PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G342800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 428aa    MW: 45687.1 Da    PI: 7.3608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G342800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-053173541254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Seita.5G342800.1.p 317 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 354
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.80E-6315359No hitNo description
SuperFamilySSF474593.66E-11315366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0077316360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-9319362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MLRFPSPPFL PFHPSHFLPH LERSNSTTRR GQGDPSPLSM ADEWWSSTSH RSHGTSACSA  60
ARAPLMVTDR VACGWATTSS PTAAAESTSS ITFQDPYRSS THQPMSDAAS SLGDPHVDWT  120
QAFLNGRSDT SFQAVLQDDD MVRAQPAAGG EAPAMNNPLI RDMDSGFLVD QAQLAPSPYG  180
TAPSQAIFNS TAGHGISVYG DSQSSISYDD AASMQFSQLL KPSVPASAPM QGGGGAPMLQ  240
YCLSGGYLPF GGPLPPSQLL LQALQTTKPS SRSSNANSLT VKDASSPATR KSVSESAAAV  300
KRPRIEAPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIEY IKFLHDQVSS  360
LSSPYLKNVI PLQQFQQKGS EKAKDNGETK QDLRSRGLCL VPVASTYTVA AETVPEFWHP  420
TFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G342800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698011e-168EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970206.10.0transcription factor bHLH112
TrEMBLA0A368RBT60.0A0A368RBT6_SETIT; Uncharacterized protein
STRINGSi001796m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-48bHLH family protein