PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G322800.1.p | ||||||||
Common Name | LOC101755973, SETIT_002546mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 271aa MW: 28824.8 Da PI: 6.3184 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.9 | 3.2e-11 | 146 | 187 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L Seita.5G322800.1.p 146 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVL 187 5999*********************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-14 | 143 | 207 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.795 | 145 | 197 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-9 | 147 | 192 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.7E-12 | 147 | 201 | No hit | No description |
SuperFamily | SSF57959 | 6.68E-12 | 147 | 201 | No hit | No description |
CDD | cd14703 | 1.23E-23 | 148 | 199 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 150 | 165 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAQLPPRIPA AVHHWPEGGH HGAAAWADDF AEFAASRRGA HRRSLSDSVA FVEVAPADGA 60 AGEFDRLDDD QLMSMFPDEA GGGVSSSAPG SDNGGSSDSD GEKRGGGAPA GGGSNGCDDE 120 RNEASDAQAL ATGQAAAAST ELIRDPKRVK RILANRQSAQ RSRVRKLQYI SELERSVTTL 180 QNEVSVLSPR VAFLDQQRTI LTVGNSHLKQ RIAALAQDKI FKDAHQEALR KEIERLRQVY 240 EQQSLKMSAG SAASEHGPPP PVRAEKELMS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G322800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039136 | 1e-177 | BT039136.1 Zea mays full-length cDNA clone ZM_BFb0374H13 mRNA, complete cds. | |||
GenBank | BT087285 | 1e-177 | BT087285.1 Zea mays full-length cDNA clone ZM_BFb0029G15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969997.1 | 0.0 | basic leucine zipper 6 | ||||
Swissprot | Q5JMK6 | 1e-117 | BZP06_ORYSJ; Basic leucine zipper 6 | ||||
TrEMBL | K3XKX3 | 0.0 | K3XKX3_SETIT; Uncharacterized protein | ||||
STRING | Si002546m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 3e-56 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G322800.1.p |
Entrez Gene | 101755973 |
Publications ? help Back to Top | |||
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