PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G307700.1.p
Common NameLOC101768562, SETIT_002751mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 238aa    MW: 25321.4 Da    PI: 7.9944
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G307700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32158216159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Seita.5G307700.1.p 158 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 216
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33144216IPR003657WRKY domain
SuperFamilySSF1182901.57E-28151217IPR003657WRKY domain
PROSITE profilePS5081128.782153218IPR003657WRKY domain
SMARTSM007742.0E-38158217IPR003657WRKY domain
PfamPF031066.1E-26159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MENLQGGDDE SHGFSGFPYF SVPSTPVLDA PPPSLSSEDD NQHGTLASLQ QAACNGLPPL  60
GPDQLAAPPM INLPPMVDWS SLIQQASLMG VPPVPGLQQA VVPQLDQSGE NDGGGEGAGS  120
SGGGKDKAAK GGGAGRSGKK KASRPRFAFQ TRSANDILDD GYRWRKYGQK AVKNSAHPRS  180
YYRCTHHTCN VKKQVQRLAK DTSIVVTTYE GVHNHPCEKL MEALSPILKQ LQFLSQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-24149215874Probable WRKY transcription factor 4
2lex_A7e-24149215874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G307700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282441e-123KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969857.11e-176probable WRKY transcription factor 56
TrEMBLK3XLH81e-175K3XLH8_SETIT; Uncharacterized protein
STRINGSi002751m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-56WRKY DNA-binding protein 24