PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G282600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 14535.5 Da PI: 8.2791 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.8 | 3.6e-10 | 26 | 67 | 11 | 55 |
AP2 11 krgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + g+W+AeIrdp + +lg+f tae+A a++ + +++g Seita.5G282600.1.p 26 REGKWAAEIRDP-----HhvVCKWLGTFNTAEDATHAYDIVAVEFWG 67 579********7.....559*******************99998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.713 | 7 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-13 | 26 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-14 | 26 | 76 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-18 | 27 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.62E-15 | 28 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEGSSPRLRA VPPSRGRGQA AAVVEREGKW AAEIRDPHHV VCKWLGTFNT AEDATHAYDI 60 VAVEFWGRRT KLNFHYNAAP APAPTSMYHL LQPLLESLHE TCGLNASSAV HVALATVAPA 120 GQHGARPVPK EQNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G282600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954022.1 | 1e-43 | ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A368RBD8 | 2e-94 | A0A368RBD8_SETIT; Uncharacterized protein | ||||
STRING | Si018144m | 6e-43 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G282600.1.p |