PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G267100.1.p
Common NameLOC101767341, SETIT_002238mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 325aa    MW: 35141.5 Da    PI: 10.2725
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G267100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.41.8e-1318104186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ ++      s ++++ q
  Seita.5G267100.1.p  18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVAEAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGS------SPWAFYGQ 102
                         7*******************************************999999*********************999886......46888888 PP

            trihelix  85 le 86 
                         l+
  Seita.5G267100.1.p 103 LD 104
                         76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2316104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VAEAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGSSPWAFY GQLDLLVGPT LSGAAAGGGG  120
GKKPSPPRAA LPVFRRRRSP SRSPSPQSPP PLPMALPLTN YHRGSNLPSA NLIHKAAAAA  180
AAAATESESE DGYNNDYDDD DGYQQSPSRS VSSRSGGGAT AAAPAVGSKR KMSSGSGGFG  240
ELARAIETFA DMYERMEAAK QRHAEEMERQ RIKFLKDLEL KRMQAFVDMQ LQLARAKHAR  300
KGDASSEMLM SLAALPFLSS PSYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G267100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278551e-180KJ727855.1 Zea mays clone pUT5900 trihelix transcription factor (THX17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969510.10.0trihelix transcription factor ASIL2
TrEMBLK3XK150.0K3XK15_SETIT; Uncharacterized protein
STRINGSi002238m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-30sequence-specific DNA binding transcription factors