PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G250500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 314aa    MW: 33028.3 Da    PI: 4.3825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G250500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-2092142155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g
  Seita.5G250500.1.p  92 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDTAAIQLRG 142
                         69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1292142IPR001471AP2/ERF domain
CDDcd000184.21E-2892149No hitNo description
Gene3DG3DSA:3.30.730.102.3E-2993150IPR001471AP2/ERF domain
SMARTSM003803.6E-3593156IPR001471AP2/ERF domain
PROSITE profilePS5103223.34193150IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2293151IPR016177DNA-binding domain
PRINTSPR003672.6E-1094105IPR001471AP2/ERF domain
PRINTSPR003672.6E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDLTDSS GEEEGCGARR VGRMVRELPP VAVAAAPAAP LPEQCSAGDG  60
ERGRRVAGGV GPGVCSGARR RLAKGGPGAT STKFRGVRRR PWGKFAAEIR DPWRGVRVWL  120
GTFDTAEEAA RVYDTAAIQL RGPNATTNFS AANSGSGVGQ DQDPATPGYE SGAESSPAAS  180
SPTSVLRKVP SLSSLAEDSK DDSDAAPCEP EPAAAPERRS LSVLEEEELG EFVPFEDAPV  240
YATSGFWDIQ PDAGFLYAEP SSPEASWNAA ASFGPASSGE APSWAAASPT VQENDYFEDL  300
RDLFPLHPLP AIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2386158781Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G250500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969361.10.0ethylene-responsive transcription factor 4-like
TrEMBLA0A368RA880.0A0A368RA88_SETIT; Uncharacterized protein
STRINGPavir.Eb01758.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-26cytokinin response factor 1