PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G249900.1.p
Common NameLOC101775299, SETIT_002203mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 329aa    MW: 34405.3 Da    PI: 6.9393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G249900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.41.9e-25135196159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg +WrKYGqK++ g+++pr+Y+rCt++   +C++ k+v+r++ dp +++++Y+g+H++ 
  Seita.5G249900.1.p 135 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqSCHASKQVQRTDGDPLLFDVMYHGSHTCA 196
                         58***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-26123197IPR003657WRKY domain
SuperFamilySSF1182905.23E-24130197IPR003657WRKY domain
PROSITE profilePS5081119.784130193IPR003657WRKY domain
SMARTSM007748.2E-36135197IPR003657WRKY domain
PfamPF031067.0E-24136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEGIMSEEKC ALVSELVRVL EMVRQLEEHM AGQQQQGGVG GAAAGGDLRC RALVCTMRDS  60
IDRAVHMAMS SCADGRGGQP ESPPSGGDGS PRSAGSDQGG DFRGRGNAAG QCKKRKTLPK  120
RSTQVRVSAV HVTPLDDGLS WRKYGQKDIL GAKYPRAYFR CTHRHTQSCH ASKQVQRTDG  180
DPLLFDVMYH GSHTCAQAQG AGAHPSGNQG ARPAAASGEH SQARAQPTAA AEQTASPSPG  240
LEAAGPVLPF SLPSNVPARG ADDAGGVGVR VTASPFVSPA TPESLVRDAP HHDVELASTS  300
NSPMGMAEMD FMFPLDATDF LENPASYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-22128195168OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G249900.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284191e-124KJ728419.1 Zea mays clone pUT6724 WRKY transcription factor (WRKY74) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969356.10.0probable WRKY transcription factor 53
TrEMBLK3XJY00.0K3XJY0_SETIT; Uncharacterized protein
STRINGSi002203m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-35WRKY family protein