PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G249300.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 530aa MW: 54430.4 Da PI: 5.9567

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G249300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	402	424	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg +F+ +L H+r+H Seita.5G249300.1.p 402 HACKVCGVVFPAGVQLGGHMRKH 424 67********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.43E-8	350	424	No hit	No description
PROSITE profile	PS50157	8.871	350	377	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.7E-4	350	373	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.74	350	372	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	352	372	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.8E-7	401	426	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.785	402	429	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.17	402	424	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	404	424	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MAGSSEERLR RPTSRFHADL HDDEPEEGEV VPGYHSDVDT EEYYNRHSYS SDSDETVSDS 60 NAACSVPENY DDATSPYPVA AKYGSAGASS VAANNNNGGN ASSSSVAAPV MLPCPVCGKE 120 FSSQKVHQHG VGRQDQGIGK VRGIKRDVVP VVGRWGGNGK RGCLGLGGRA ATPNAESDQS 180 MAIVVAEPQI VFQPMPLAFA APNLSSVSIA SASPNPSSVP TASAMATPNP SSSSMASTSP 240 NLSPVPLASS MTNVSDQSMT NVSDQSSSAQ PMNNDAMDTV VAGADNPRSD VDAHAATPST 300 PPAAGEQAPS VHQQPMAPPS PPAAVERAPP AHQPPIVPRP AAGRQNPNGY TCNECDAWFR 360 THQGLGGHRA GHKNRELVAV AAEMLGDGAV PGRRNAKPEK THACKVCGVV FPAGVQLGGH 420 MRKHYAGPPI VPNKKPRLVI QPLLPPPALT LVLPANVYAD EASPAPALEA AVQPGPAPAV 480 ERTPEPAPGP AVVGRVLLFG IDIGVGVKKP AAHEDPSATE GSASTDGEQ*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MAGSSEERLR RPTSRFHADL HDDEPEEGEV VPGYHSDVDT EEYYNRHSYS SDSDETVSDS  60
NAACSVPENY DDATSPYPVA AKYGSAGASS VAANNNNGGN ASSSSVAAPV MLPCPVCGKE  120
FSSQKVHQHG VGRQDQGIGK VRGIKRDVVP VVGRWGGNGK RGCLGLGGRA ATPNAESDQS  180
MAIVVAEPQI VFQPMPLAFA APNLSSVSIA SASPNPSSVP TASAMATPNP SSSSMASTSP  240
NLSPVPLASS MTNVSDQSMT NVSDQSSSAQ PMNNDAMDTV VAGADNPRSD VDAHAATPST  300
PPAAGEQAPS VHQQPMAPPS PPAAVERAPP AHQPPIVPRP AAGRQNPNGY TCNECDAWFR  360
THQGLGGHRA GHKNRELVAV AAEMLGDGAV PGRRNAKPEK THACKVCGVV FPAGVQLGGH  420
MRKHYAGPPI VPNKKPRLVI QPLLPPPALT LVLPANVYAD EASPAPALEA AVQPGPAPAV  480
ERTPEPAPGP AVVGRVLLFG IDIGVGVKKP AAHEDPSATE GSASTDGEQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G249300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368R8G4	0.0	A0A368R8G4_SETIT; Uncharacterized protein
STRING	Si004298m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7612	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46090.1	3e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Seita.5G249300.1.p