PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G241600.1.p | ||||||||
Common Name | LOC101783789, SETIT_002823mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 24654.9 Da PI: 9.6908 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 76 | 129 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa+ k Seita.5G241600.1.p 76 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 129 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 120.9 | 6.4e-39 | 76 | 163 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr + Seita.5G241600.1.p 76 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR-A 163 9*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 51 | 132 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.47E-19 | 65 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 71 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-16 | 73 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.85E-15 | 74 | 132 | No hit | No description |
Pfam | PF00046 | 8.8E-16 | 76 | 129 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.4E-23 | 131 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.0E-10 | 131 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGSTSPSGLE LTMAVPGLSS SSGSEGYAGN GNGNAMRDLD MNQPASGGEE EEFPMGSVEE 60 DEEERGAGPG GPHRPKKLRL SKEQSRLLEE SFRLNHTLTP KQKEALAVKL KLRPRQVEVW 120 FQNRRARTKL KQTEMECEYL KRCFGSLTEE NRRLQREVEE LRALRVAPPT VLSPHTRQPL 180 PASALSMCPR CERITAATGA PAARTPRPAA AANPFHPRRP SAAF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 131 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G241600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966190 | 0.0 | EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969293.1 | 1e-161 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 1e-129 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 1e-129 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | K3XLQ0 | 1e-160 | K3XLQ0_SETIT; Uncharacterized protein | ||||
STRING | Si002823m | 1e-161 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 1e-64 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G241600.1.p |
Entrez Gene | 101783789 |