PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G233100.1.p
Common NameLOC101753693, SETIT_001863mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 379aa    MW: 39734.5 Da    PI: 6.254
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G233100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.83.3e-26194252259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  +H h+
  Seita.5G233100.1.p 194 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMADHCHP 252
                         699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-26192254IPR003657WRKY domain
SuperFamilySSF1182908.24E-24193254IPR003657WRKY domain
SMARTSM007741.6E-30193253IPR003657WRKY domain
PROSITE profilePS5081128.874194254IPR003657WRKY domain
PfamPF031065.5E-22195252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MRGVLLLMAE HFNDWDLQAV VRSCGSVAHP DPPAGRGRPR AAAAPRAEAE AEAAGAAPAE  60
PTTPAAARGG EVPARAAPVA AAVQGHERAP PAVAAKGAAL LYDLEYLDLD HKPFLLPVTP  120
SPRGARAGDD GREREVMISF PAAAASTSGM QQQRAVPPGR KAGARTPRPK RSKKSQLKKV  180
VREMPVADGG ASSSDPWAWR KYGQKPIKGS PYPRGYYKCS SMKGCMARKL VERSPAKPGV  240
LIVTYMADHC HPVPTQLNAL AGTTRHKSSS AGTAAAAEDT ATSSPRSHEQ QGPSSVGRDG  300
STADAEDAAR CDVVDGNDKS TAMALEFGAE EIAAADDENE LWPAGMDLDE LLAPADDDFD  360
FEHVVDEEDG VLGRRLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-17174255280Disease resistance protein RRS1
5w3x_D2e-17174255280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G233100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969219.10.0probable WRKY transcription factor 65
TrEMBLK3XIZ00.0K3XIZ0_SETIT; Uncharacterized protein
STRINGSi001863m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-35WRKY family protein