PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G153300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 618aa    MW: 66085.9 Da    PI: 7.1756
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G153300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix651.6e-20214329186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.............................lkkplWeevskkmrergferspkqCkekwenlnkryk 62 
                         +Wt+++v++Li+++ +++++                                  +kk++W++vs++m+e+ f++sp+qC++k+++lnkryk
  Seita.5G153300.1.p 214 KWTDSMVRLLITVVYNVGDDGDGVGaaaaggagggkpgraahghghghaaasqqQKKGKWKSVSQAMMEKTFTVSPQQCEDKFNDLNKRYK 304
                         7***********999555555532112344555555666666666666666666************************************* PP

            trihelix  63 kikegekkr.tsessstcpyfdqle 86 
                         ++ +  +++ +++++++ +++d ++
  Seita.5G153300.1.p 305 RVVDLLGRGrACRVVENPALLDAID 329
                         ******9996799999999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-17212355No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MGSQAVSRPC GLPPLETARR GGKTRAGGGR SRTAETGGDR PHGCACHPIK TPSPLPFSHG  60
QEVKSRERSR EREREPERVR VALEIGGLVA MERGDGGGGM APRGGGGVVG SAAMLGLDMH  120
LAPQQMHPAA AFQHQAAEHH HGGFQLQQPA PVRPQQQQPS SFSPYSNTSS SRGVVGAAGV  180
GHDDDMVGNG FGGGKVQQQQ QMVAAAGCPW SRMKWTDSMV RLLITVVYNV GDDGDGVGAA  240
AAGGAGGGKP GRAAHGHGHG HAAASQQQKK GKWKSVSQAM MEKTFTVSPQ QCEDKFNDLN  300
KRYKRVVDLL GRGRACRVVE NPALLDAIDD LSPKAKDEAR KLLSSKHLFF REMCAYHNGG  360
GHAPPHAAAP GDAACLHHPP PAPAARHAQP QQAAAPSPPA GTKDSSADDD GDSDDALMSN  420
NGDDEEDEDY GDDEEDGHAY PLNQRAHHQH NGNKRGRGGE DSGAADDDND DEPHSGGRRA  480
MRPSAAAEQL RSELAAATVA ADPQQARCWV RRRAVEVEER QVALESRAFE LEQQRLKWER  540
FRANKERDME RARLENDRRR IESRRMLLML RHRDIELDMA EANSSSVDHH PGASPLVGAG  600
HYQQPIGSSP STAGHPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12028GGKTRAGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G153300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890282e-95AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBankAP0034142e-95AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039212e-95AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149572e-95AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682182.10.0uncharacterized protein LOC101752474
TrEMBLA0A368R5050.0A0A368R505_SETIT; Uncharacterized protein
STRINGGRMZM2G305362_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-41sequence-specific DNA binding transcription factors