PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.5G105400.1.p | ||||||||
Common Name | SETIT_004029mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19110.4 Da PI: 5.235 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.1e-12 | 75 | 113 | 3 | 45 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAaka 45 y GV +++ +grW+AeIrdp + r +lg+f+ta++A + Seita.5G105400.1.p 75 YIGVQRRP-WGRWAAEIRDP-----HyaVRKWLGTFDTAKDATRT 113 88**9999.**********7.....448**********9999775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 74 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-9 | 74 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.909 | 74 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-12 | 75 | 116 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.25E-16 | 75 | 115 | No hit | No description |
Pfam | PF00847 | 3.3E-5 | 75 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MSGLCCQTKG ACTSFRTLQG SPHVLRKSIP NIKAPAACAY ATCGVDGCAG CGCELLTAAG 60 TRSSSDSDDE GEYEYIGVQR RPWGRWAAEI RDPHYAVRKW LGTFDTAKDA TRTYNITDSL 120 HETCGANASS SMDVALAVAA SAEQHGTRPV PKEQDIWDRL NEFMMMDDGS FWSPML* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.5G105400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954022.1 | 3e-49 | ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | K3XQ49 | 1e-129 | K3XQ49_SETIT; Uncharacterized protein | ||||
STRING | Si004029m | 1e-130 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72360.1 | 4e-16 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.5G105400.1.p |