PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.5G097900.1.p | ||||||||
Common Name | LOC101780842, SETIT_005033mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27168.1 Da PI: 6.7096 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 88 | 134 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RRdr+N +f Lr +P +++ a+ L Av YI +L Seita.5G097900.1.p 88 MSHVEAERQRRDRLNRRFCDLRAAVPRV-----SRMDRASLLSDAVAYIAEL 134 589************************5.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.767 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-15 | 88 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-14 | 89 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-9 | 89 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MDELACPASS GVPPFPVSFS AVSHDQHPPA LEFMSCDEIL EQWLLGKQDE EEPRDGRRAI 60 QPPPPAPFVE RSRPGAWKPG PRTCAPAMSH VEAERQRRDR LNRRFCDLRA AVPRVSRMDR 120 ASLLSDAVAY IAELRGRVEQ LEKEASRRAS LGHCSLPGAP EQEDMALEAW MIGPEAAALR 180 LRTAAERHAP ALLMAALRAL DLPVHHVCVC RVGGVTVQDV VVDVPSAGLR REGQLRAALH 240 GLLLQESG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-18 | 88 | 144 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 3e-18 | 88 | 144 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 3e-18 | 88 | 144 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 3e-18 | 88 | 144 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 3e-18 | 88 | 144 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 3e-18 | 88 | 144 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 3e-18 | 88 | 144 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 3e-18 | 88 | 144 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 94 | 99 | RQRRDR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.5G097900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ728281 | 9e-49 | KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971643.1 | 1e-176 | transcription factor bHLH14 | ||||
TrEMBL | K3XSY0 | 1e-175 | K3XSY0_SETIT; Uncharacterized protein | ||||
STRING | Si005033m | 1e-175 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-19 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.5G097900.1.p |
Entrez Gene | 101780842 |